Defined Gut Microbiota Medium (dGMM)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The defined Gut Microbiota Medium (dGMM) is composed of all compounds described in 
'Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies'\ :footcite:p:`Tramontano2018`.
The dGMM was used under anaerobic conditions in the paper and, thus, does not contain any oxygen. However, a gas mix 
containing carbon dioxide, nitrogen and hydrogen was added to the anaerobic chamber. Hence, all three gases were added 
to the following definition.

.. list-table:: dGMM composition
  :name: dgmm_comp
  :align: center
  :widths: 54 26
  :header-rows: 1
  :class: no-scrollbar-table

  * - name
    - source
  * - 3-[(2R)-2,4-Dihydroxy-3,3-dimethylbutanamido]propanoate [Pantothenate]
    - Calcium Pantothenate
  * - 4,5-Bis(hydroxymethyl)-2-methylpyridin-3-ol [Pyridoxine]
    - Pyridoxine HCl
  * - 4-Aminobenzoic acid
    - p-Aminobenzoic acid
  * - 5-(1,2-Dithiolan-3-yl)pentanoate [Lipoate]
    - Lipoic acid
  * - Acetate [Acetic acid]
    - Acetic acid
  * - Biotin
    - Biotin
  * - Butyrate
    - Butyric acid
  * - Calcium(II) cation [Ca(2+)]
    - CaCl2 (anhydrous), Calcium Pantothenate
  * - Carbon dioxide [CO2]
    - Carbon dioxide (From gas mix)
  * - Hydrogencarbonate
    - NaHCO3
  * - Cellobiose
    - Cellobiose
  * - Chloride [Cl(-)]
    - NiCl2.6H2O, CaCl2 (anhydrous), NaCl, Thiamine HCl, Pyridoxine HCl
  * - Cob(I)alamin
    - Vitamin B12
  * - Cob(II)alamin
    - Vitamin B12
  * - Cobalt(II) cation [Co(2+)]
    - Co(NO3)2.6H2O
  * - Copper(II) cation [Cu(2+)]
    - CuSO4 (anhydrous)
  * - D-Fructose
    - Fructose
  * - D-Glucose
    - D-Glucose
  * - HemeD
    - Hematin
  * - Hydrogen [H(+)]
    - Thiamine HCl, Pyridoxine HCl, KH2PO4
  * - Iron(II) cation [Fe(2+)]
    - FeSO4.7H2O
  * - Iron(III) cation [Fe(3+)]
    - FeSO4.7H2O
  * - Isovalerate
    - Isovaleric acid
  * - L-Cysteine
    - L-Cysteine
  * - L-Histidine
    - L-Histidine
  * - Magnesium(II) cation [Mg(2+)]
    - MgSO4*7H2O
  * - Maltose
    - Maltose
  * - Manganese(II) cation [Mn(2+)]
    - MnSO4*H2O
  * - Menadione [Vitamin K]
    - Vitamin K (menadione)
  * - N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid [Folate]
    - Folic acid
  * - Nickel(II) cation [Ni(2+)]
    - NiCl2.6H2O
  * - Nitrate [NO3(-)]
    - Co(NO3)2.6H2O
  * - Nitrogen
    - Nitrogen (From gas mix)
  * - Phosphate [PO4(3-)]
    - KH2PO4
  * - Potassium(I) cation [K(+)]
    - AlK(SO4)2 (anhydrous), KH2PO4
  * - Propionate
    - Propionic acid
  * - Pyridine-3-carboxylate [Niacin]
    - Niacin
  * - Riboflavin
    - Riboflavin
  * - Selenite [SeO3 (2-)]
    - Na2SeO3 (anhydrous)
  * - Sodium(I) cation [Na(+)]
    - Na2SeO3 (anhydrous), Na2WO4.2H2O, NaCl, NaHCO3, Na2MoO4.2H2O
  * - Sulfate [SO4(2-)]
    - FeSO4.7H2O, ZnSO4*7H2O, AlK(SO4)2 (anhydrous), CuSO4 (anhydrous), MnSO4*H2O, MgSO4*7H2O
  * - Tetraoxidomolybdate(VI) [Molybdate]
    - Na2MoO4.2H2O
  * - Thiamine
    - Thiamine HCl
  * - Tungstate
    - Na2WO4.2H2O
  * - Vitamin B12
    - Vitamin B12
  * - Water [H2O]
    - FeSO4.7H2O, ZnSO4*7H2O, Co(NO3)2.6H2O, Na2WO4.2H2O, NiCl2.6H2O, MgSO4*7H2O, Na2MoO4.2H2O
  * - Zinc(II) cation [Zn(2+)]
    - ZnSO4*7H2O
  * - Dihydrogen [H2]
    - Hydrogen (From gas mix)
  * - Aluminium(III) cation [Al(3+)]
    - AlK(SO4)2 (anhydrous)

.. footbibliography::