About different applications
============================

As refineGEMs includes a number of different functionalities, this page lists some of the
possible applications of refineGEMs in the context of different areas of model curation.

Model refinement
----------------

.. toctree:: 

    Automated polishing <modules-desc/polish>
    Biomass normalisation <modules-desc/biomass>
    Energy generating cycles (EGCs) <modules-desc/egcs>
    Gap-filling <modules-desc/gapfill>

Model annotation
----------------

.. toctree:: 
    Pathway addition <modules-desc/pathways>
    SBO-Term annotation <modules-desc/sboann>

Analysis and simulation
-----------------------

.. toctree:: 
    Growth simulation <modules-desc/growth>
    Statistical report <modules-desc/stats>

Further examples
----------------

.. toctree:: 
    Application examples <modules-desc/examples>