Installation
The package refineGEMs and all its dependencies can be installed within virtual environments like conda or pipenv.
Warning
Hint
For help and information about known bugs, refer to Help and FAQ.
To install refineGEMs as Python package from PyPI, simply install it via pip:
pip install refineGEMs
The corresponding project site can be found here.
refineGEMs depends on the tools MCC and
BOFdat which cannot directly be installed via
PyPI. Please install both tools before using refineGEMs:
Hint
BOFdat should be installed as stated below. The fork contains certain bug fixes such that the program is able to run. If you have a functional version of BOFdat installed you can try to use it. In case you encounter problems with your own version, please, install BOFdat as stated below.
pip install "masschargecuration@git+https://github.com/Biomathsys/MassChargeCuration@installation-fix"
pip install "bofdat@git+https://github.com/draeger-lab/BOFdat"
Hint
For the installation for developers, refer to Installation for developers