Main modules

• Biomass normalisation
• Gap filling
  • Manual gap filling
  • Automated gap filling
    • The module gapfill can be used to:
      • a. perform gap analysis
      • b. add genes, metabolites and reactions from an Excel table to a model
      • c. or perform gap analysis and add the result directly to a model.
    • Relevant parameters
    • Data acquisition from BioCyc
• Growth simulation
  • Interpreting the results
  • Implementation
  • Available media
    • Blood Medium (Blood)
    • Casamino Acids (CasA)
    • Minimal medium for Corynebacterium glutamicum (CGXII)
    • Defined Gut Microbiota Medium (dGMM)
    • Lysogeny Broth (LB)
    • M9 minimal medium (M9)
    • Multi-Purpose Artificial Urine (MP-AU)
    • Roswell Park Memorial Institute 1640 (RPMI)
    • Synthetic Nasal Medium x3 (SNM3)
• Pathway addition
• Automated polishing
• SBO-Term annotation
• Application examples
  • You can load models