Dissipation reaction metabolites (DiReM)
This subset contains the metabolites needed for the dissipation reactions to check for energy-generating cycles (EGCs) in a model as described by Fritzemeier et al.[1].
Caution
This subset is not meant for growth analyses purposes as it holds no biological meaning when adding it to a medium.
name |
percent |
|---|---|
2-Oxoglutarate [Oxoglutaric acid] |
1 |
ADP [Adenosine diphosphate] |
1 |
ATP [Adenosine triphosphate] |
1 |
Acetate [Acetic acid] |
1 |
Ammonia |
1 |
CDP [Cytidine diphosphate] |
1 |
D-Glucose |
1 |
FMN [oxidized Flavin mononucleotide] |
1 |
FAD [oxidized Flavin adenine dinucleotide] |
1 |
GDP [Guanosine diphosphate] |
1 |
GTP [Guanosine triphosphate] |
1 |
Hydrogen [H(+)] |
1 |
NAD [oxidized Nicotinamide adenine dinucleotide] |
1 |
NADP [oxidized Nicotinamide adenine dinucleotide phosphate] |
1 |
Phosphate [PO4(3-)] |
1 |
UDP [Uridine diphosphate] |
1 |
Water [H2O] |
1 |
CTP [Cytidine triphosphate] |
1 |
UTP [Uridine triphosphate] |
1 |
ITP [Inosine triphosphate] |
1 |
IDP [Inosine diphosphate] |
1 |
NADH [reduced Nicotinamide adenine dinucleotide] |
1 |
NADPH [reduced Nicotinamide adenine dinucleotide phosphate] |
1 |
FADH2 [reduced Flavin adenine dinucleotide] |
1 |
FMNH2 [reduced Flavin mononucleotide] |
1 |
Ubiquinone-8 |
1 |
Ubiquinol-8 |
1 |
Menaquinone-8 |
1 |
Menaquinol-8 |
1 |
2-Demethylmenaquinol-8 |
1 |
2-Demethylmenaquinone-8 |
1 |
Acetyl-CoA |
1 |
Coenzyme A |
1 |