Available subsets

The list of subsets available in the database can be found below. Each entry for a subset provides further information about the substances. The rules used to get the in silico subset definitions are the same as described for a medium (see Section From laboratory to in silico medium).

Caution

The subset called DiReM is a pseudo subset as it holds no biological meaning when adding it to a medium and is solely used in the egcs module. It contains the metabolites needed for the dissipation reactions, which in turn are used to check for the exsistence of energy generating cycles (EGCs).

• Casamino acids (CasA)
• Dissipation reaction metabolites (DiReM)
• Culture medium additive Tween 80™ (Tween 80™, oleate source)
• Artificial Sebum (artSe)
• Proteinogenic amino acids (protAA)