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Contents:

  • Installation
  • Usage
  • About different applications
  • Media & Subsets
    • Content of the Database
      • Available media
        • Brain Heart Infusion (BHI, work-in-progress)
        • Basal Medium as described in Swaney et al. 2023 (BMS23)
        • Artificial Sweat (artSw)
        • Blood medium (Blood)
        • Casamino Acids medium (CasA)
        • Chemically Defined Medium as described in Wegkamp et al. 2010 (CDMW10)
        • Corynebacterium glutamicum optimized growth medium (CGXII)
        • Defined Gut Microbiota Medium (dGMM)
        • Lysogeny broth (LB)
        • M9 minimal medium (M9)
        • Multi-Purpose Artificial Urine (MP-AU)
        • Plantarum Minimal Medium for L. plantarum WCFS1 (PMM5, true minimal medium)
        • Plantarum Minimal Medium for L. plantarum WCFS1 (PMM7, pseudo minimal medium)
        • Roswell Park Memorial Institute 1640 Medium (RPMI)
        • Synthetic Nasal Medium Version 3 (SNM3)
      • Available subsets
    • Working with the Data
  • Third-party databases and tools
  • Content of refineGEMs
  • Help and FAQ
  • Logo licence and brand usage
  • Documentation graphics licence
  • Notes for developers
refineGEMs
  • Media & Subsets
  • Available media
  • View page source

Available media

The list of media available in the database can be found below. Each entry for a medium provides further information about the substances and a link to the original puplication. The rules used to get the in silico media definitions are described in the Section From laboratory to in silico medium.

  • Brain Heart Infusion (BHI, work-in-progress)
  • Basal Medium as described in Swaney et al. 2023 (BMS23)
  • Artificial Sweat (artSw)
  • Blood medium (Blood)
  • Casamino Acids medium (CasA)
  • Chemically Defined Medium as described in Wegkamp et al. 2010 (CDMW10)
  • Corynebacterium glutamicum optimized growth medium (CGXII)
  • Defined Gut Microbiota Medium (dGMM)
  • Lysogeny broth (LB)
  • M9 minimal medium (M9)
  • Multi-Purpose Artificial Urine (MP-AU)
  • Plantarum Minimal Medium for L. plantarum WCFS1 (PMM5, true minimal medium)
  • Plantarum Minimal Medium for L. plantarum WCFS1 (PMM7, pseudo minimal medium)
  • Roswell Park Memorial Institute 1640 Medium (RPMI)
  • Synthetic Nasal Medium Version 3 (SNM3)
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