Chemically Defined Medium as described in Wegkamp et al. 2010 (CDMW10)

The CDMW10 medium is a chemically defined medium that is described by Wegkamp et al.[1]. The following in silico definition contains all components as described in ‘Development of a minimal growth medium for Lactobacillus plantarum[1] (Table 1).

Table 6 CDMW10 composition

name

source

2-Oxidopropane-1,2,3-tricarboxylate [Citrate]

Ammonium citrate

3-[(2R)-2,4-Dihydroxy-3,3-dimethylbutanamido]propanoate [Pantothenate]

Panthothenic acid

4,5-Bis(hydroxymethyl)-2-methylpyridin-3-ol [Pyridoxine]

Pyridoxine

4-(Azaniumylmethyl)-3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-1-ium [Pyridoxamine]

Pyridoxamine

4-Aminobenzoic acid

Para-aminobenzoic acid

5-(1,2-Dithiolan-3-yl)pentanoate [Lipoate]

6,8-thiotic acid

Acetate [Acetic acid]

Sodium acetate

Adenine

Adenine

Ammonia

Ammonium citrate

Biotin

Biotin

Calcium(II) cation [Ca(2+)]

CaCl2

Chloride [Cl(-)]

MgCl2

Cobalt(II) cation [Co(2+)]

CoSO4

Copper(II) cation [Cu(2+)]

CuSO4

D-Alanine

Alanine

D-Glucose

Glucose

D-Serine

Serine

Glycine

Glycine

Hydrogen [H(+)]

Water,(NH4)6Mo7O24

Inosine

Inosine

Iron(II) cation [Fe(2+)]

FeCl2

Iron(III) cation [Fe(3+)]

FeCl3

L-Alanine

Alanine

L-Arginine

Arginine

L-Ascorbate [Ascorbic acid]

Ascorbic acid

L-Aspartate

Aspartic acid

L-Cysteine

Cysteine

L-Glutamate

Glutamate

L-Histidine

Histidine

L-Isoleucine

Isoleucine

L-Leucine

Leucine

L-Lysine

Lysine

L-Methionine

Methionine

L-Phenylalanine

Phenylalanine

L-Proline

Proline

L-Serine

Serine

L-Threonine

Threonine

L-Tryptophan

Tryptophan

L-Tyrosine

Tyrosine

L-Valine

Valine

Magnesium(II) cation [Mg(2+)]

MgCl2

Manganese(II) cation [Mn(2+)]

MnCl2

Orotate [Orotic acid]

Orotic acid

Phosphate [PO4(3-)]

Phosphate

Potassium(I) cation [K(+)]

From buffer

Pyridine-3-carboxylate [Niacin]

Nicotinic acid

Riboflavin

Riboflavin

Sodium(I) cation [Na(+)]

Sodium acetate

Sulfate [SO4(2-)]

ZnSO4

Tetraoxidomolybdate(VI) [Molybdate]

(NH4)6Mo7O24

Thiamine

Thiamine

Thymidine

Thymidine

Uracil

Uracil

Vitamin B12

Vitamin B12

Water [H2O]

Water,(NH4)6Mo7O24

Zinc(II) cation [Zn(2+)]

ZnSO4

2-amino-1,9-dihydro-6H-purin-6-one [Guanine]

Guanine

3,7-Dihydro-1H-purine-2,6-dione [Xanthine]

Xanthine